PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00354.1_g00013.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 328aa    MW: 35561.8 Da    PI: 6.0869
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00354.1_g00013.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76e-1859108255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Rsa1.0_00354.1_g00013.1  59 RYRGVRQRS-WGKWVAEIREPRK---RTRKWLGTFATAEDAARAYDRAAVFLYG 108
                              59****999.**********954...5**********************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.19459116IPR001471AP2/ERF domain
SMARTSM003801.4E-3759122IPR001471AP2/ERF domain
PfamPF008476.3E-1259108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2959116IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2059116IPR016177DNA-binding domain
CDDcd000183.94E-1959114No hitNo description
PRINTSPR003672.5E-106071IPR001471AP2/ERF domain
PRINTSPR003672.5E-108298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDPLPSQQEQ QHNLDDIQQT LTQNPQSDSN TTTTTTDSTS SVQQRKRKGK GGPDNSKFRY  60
RGVRQRSWGK WVAEIREPRK RTRKWLGTFA TAEDAARAYD RAAVFLYGSR AQLNLSPSSP  120
SSVSSTSSSV SAASSSPSSS SSSTQTLRPL LPRPSAASVA SSFGPCGMSF TNNMFLSGGT  180
SMFCPSYGLF PHQHNQMTQV GQSHHQPYQN LNSSNKNNKV GDVELTDATS SRHEVPLGQE  240
QGGSACNDEN NNSMENFNSL AGSVGSNHSV LATVVDPVGS MGMDPGYNMV EGDGSSTVWP  300
FSGEDECSHW GSMWDFVDPF LLDFDTMI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-1960115359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013740583.11e-147PREDICTED: ethylene-responsive transcription factor ABI4-like
SwissprotA0MES81e-121ABI4_ARATH; Ethylene-responsive transcription factor ABI4
TrEMBLA0A078IR311e-146A0A078IR31_BRANA; BnaC03g72510D protein
TrEMBLA0A0D3B6061e-146A0A0D3B606_BRAOL; Uncharacterized protein
STRINGBra004978.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105522433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.11e-101ERF family protein